Paediatric Respiratory Reviews
Volume 8, Issue 3 , Pages 185-194 , September 2007

Microbiological diagnostic procedures in respiratory infections: suppurative lung disease

  • M.L. May

      Affiliations

    • Corresponding Author InformationCorresponding author. Sullivan Nicolaides Pathology, 134 Whitmore St, Taringa 4066 Qld, Australia. Tel.: +61 7 33778621; Fax: +61 7 38705971.
  • ,
  • J. Robson

References 

  1. Valery PC, Torzillo PJ, Mulholland K. Hospital-based case-control study of bronchiectasis in indigenous children in Central Australia. Pediatr Infect Dis J. 2004;23:902–908
  2. Chang AB, Grimwood K, Mulholland EK, et al. Bronchiectasis in indigenous children in remote Australian communities. Med J Aust. 2002;177:200–204
  3. Garau J. Why do we need to eradicate pathogens in respiratory tract infections?. Int J Infect Dis. 2003;7(Suppl 1):S5–S12
  4. Sharp SE, Robinson A, Saubolle M, et al. Lower Respiratory Tract Infections. Washington DC: ASM Press; 2004;pp. 3–12
  5. Rozon B, Carratala J, Verdaguer R, Dorca J, Manresa F, Guidiol F. Prospective study of the usefulness of sputum Gram stain in the initial approach to community acquired pneumonia requiring hospitalization. Clin Infect Dis. 2000;31:869–874
  6. Medline Plus [Internet] Bethesda (MD). National Library of Medline (US);[updated 2005 August 12]. Gastric culture [updated 16/6/05; reviewed 6/3/07; cited 2007 March 26] Available from: www.nlm.nih.gov/medlineplus.
  7. Smyth A. Update on treatment of pulmonary exacerbations in cystic fibrosis. Curr Opin Pulm Med. 2006;12:440–444
  8. Miller MB, Gilligan PH. Laboratory aspects of management of chronic pulmonary infections in patients with cystic fibrosis. J Clin Microbiol. 2003;41:4009–4015
  9. De Boeck K, Alifier M, Vandeputte S. Sputum induction in young cystic fibrosis patients. Eur Respir J. 2000;16:91–94
  10. Fishman JA, Roth RS, Zanzot E, Enos EJ, Ferraro MJ. Use of induced sputum specimens for microbiologic diagnosis of infections due to organisms other than Pneumocystis carinii. J Clin Microbiol. 1994;32:131–134
  11. Ho SA, Ball R, Morrison LJ, Brownlee KG, Conway SP. Clinical value of obtaining sputum and cough swab samples following inhaled hypertonic saline in children with cystic fibrosis. Pediatr Pulmonol. 2004;38:82–87
  12. Armstrong DS, Grimwood K, Carlin JB, Carzino R, Olinsky A, Phelan PD. Bronchoalveolar lavage or oropharyngeal cultures to identify lower respiratory pathogens in infants with cystic fibrosis. Pediatr Pulmonol. 1996;21:267–275
  13. Rosenfeld M, Emerson J, Accurso F, et al. Diagnostic accuracy of oropharyngeal cultures in infants and young children with cystic fibrosis. Pediatr Pulmonol. 1999;28:321–328
  14. Taylor L, Corey M, Matlow A, Sweezey NB, Ratjen F. Comparison of throat swabs and nasopharyngeal suction specimens in non-sputum-producing patients with cystic fibrosis. Pediatr Pulmonol. 2006;41:839–843
  15. Wood RE. The diagnostic effectiveness of the flexible bronchoscope in children. Pediatr Pulmonol. 1985;1:188–192
  16. Balfour-Lynn IM, Abrahamson E, Cohen G, et al. BTS guidelines for the management of pleural infection in children. Thorax. 2005;60(Suppl 1):1–21
  17. Gutierrez JP, Grimwood K, Armstrong DS, et al. Interlobar differences in bronchoalveolar lavage fluid from children with cystic fibrosis. Eur Respir J. 2001;17:281–286
  18. Labenne M, Poyart C, Rambaud C, et al. Blind protected specimen brush and bronchoalveolar lavage in ventilated children. Crit Care Med. 1999;27:2537–2543
  19. Thorpe J, Baugham R, Frame PT, Wesseler TA, Staneck JL. Bronchoalveolar lavage for diagnosing acute bacterial pneumonia. J Infect Dis. 1987;155:855–861
  20. Marchant JM, Masters IB, Taylor SM, Cox NC, Seymour GJ, Chang AB. Evaluation and outcome of young children with chronic cough. Chest. 2006;129:1132–1141
  21. Riedler J, Grigg J, Robertson CF. Role of bronchoalveolar lavage in children with lung disease. Eur Respir J. 1995;8:1725–1730
  22. Chan CC, Abi-Saleh WJ, Arroliga AC, et al. Diagnostic yield and therapeutic impact of flexible bronchoscopy in lung transplant recipients. J Heart Lung Transplant. 1996;15:196–205
  23. Kahn FW, Jones JM. Diagnosing bacterial respiratory infection by bronchoalveolar lavage. J Infect Dis. 1987;155:862–869
  24. Le Monnier A, Carbonnelle E, Zahar JR, et al. Microbiological diagnosis of empyema in children: comparative evaluations by culture, polymerase chain reaction, and pneumococcal antigen detection in pleural fluids. Clin infect Dis. 2006;42:1135–1140
  25. Byington CL, Spencer LY, Johnson TA, et al. An epidemiological investigation of a sustained high rate of pediatric parapneumonic empyema: risk factors and microbiological associations. Clin Infect Dis. 2002;34:434–440
  26. Tseng Y, Wu MH, Lin MY, Lai WW, Liu CC. Surgery for lung abscess in immunocompetent and immunocompromised children. J Pediatr Surg. 2001;36:470–473
  27. Chirinos JA, Lichtstein DM, Garcia J, Tamariz LJ. The evolution of Lemierre syndrome: report of 2 cases and review of the literature. Medicine (Baltimore). 2002;81:458–465
  28. Currie BJ, Fisher DA, Howard DM, et al. Endemic melioidosis in Tropical Northern Australia: a 10-year prospective study and review of the literature. Clin Infect Dis. 2000;31:981–986
  29. Suputtamongkol Y, Hall AJ, Dance DAB, et al. Epidemiology of melioidosis in Uban Ratchatani, northeast Thailand. Int J Epidemiol. 1994;23:1082–1090
  30. How HS, Ng KH, Yeo HB, et al. Pediatric melioidosis in Paheng, Malaysia. J Microbiol Immunol Infect. 2005;38:314–319
  31. Lumbiganon P, Viengnondha S. Clinical manifestations of melioidosis in children. Pediatr Infect Dis J. 1995;14:136–140
  32. Gilligan P, Lum G, Vandamme P, Whittier S. Burkholderia, Stenotrophomonas, Ralstonia, Brevunidmonas, Comamonas, Delftia, Pandoraea, and Acidovorax. In:  Murray PR,  Baron EJ,  Jorgensen JH,  Pfaller M,  Yolken RH editor. Manual of Clinical Microbiology. 8th Edition. Washington DC: ASM Press; 2003;p. 729–738
  33. von Graevenitz A, Zbinden R, Mutters R. Actinobacillus, Capnocytophaga, Eikenella, Kingella, Pasturella, and other fastidious or rarely encountered Gram-negative rods. In:  Murray PR,  Baron EJ,  Jorgensen JH,  Pfaller M,  Yolken RH editor. Manual of Clinical Microbiology. 8th Edition. Washington DC: ASM Press; 2003;p. 616–619
  34. Sirinavin S, Techasaensiri C, Benjaponpitak S. Invasive Chromobacterium violaceum infection in children: Case report and review. Pediatr Infect Dis J. 2005;24:559–561
  35. Levison J, Van Asperen P, Wong C, et al. The value of a CT-guided fine needle aspirate in infants with lung abscess. J Paediatr Child Health. 2004;40:474–476
  36. Lee SK, Morris RF, Cramer B. Percutaneous needle aspiration of neonatal lung abscesses. Pediatr Radiol. 1991;21:254–257
  37. Hoffer FA, Bloom DA, Colin AA, Fishman SJ. Lung abscess versus necrotising pneumonia: implications for interventional therapy. Pediatr Radiol. 1999;29:87–91
  38. Wali SO, Shugaeri A, Samman YS, Abdelaziz M. Percutaneous drainage of pyogenic lung abscess. Scand J Infect Dis. 2002;34:673–679
  39. Brook I, Finegold SM. The bacteriology and therapy of lung abscess in children. J Pediatr. 1979;94:10–14
  40. Yagupsky P, Dagan R, Howard CW, Einhom M, Kassis I, Simu A. High prevalence of Kingella kingae in joint fluid from children with septic arthritis revealed by the BACTEC blood culture system. J Clin Microbiol. 1992;30:1278–1281
  41. Vuori-Holopainen E, Peltola H. Reappraisal of lung tap: Review of an old method for better etiologic diagnosis of childhood pneumonia. Clin Infect Dis. 2001;32:715–726
  42. Ploton C, Freydiere AM, Benito Y, et al. Streptococcus pneumoniae thoracic empyema in children: rapid diagnosis by using the Binax NOW immunochromatographic membrane test in pleural fluids. Pathol Biol (Paris). 2006;54:498–501
  43. Light RW. Pleural diseases. Dis Mon. 1992;38:261–331
  44. Utine GE, Ozcelik U, Yalcin E, et al. Childhood parapneumonic effusions: biochemical and inflammatory markers. Chest. 2005;128:1436–1441
  45. Gilligan PH, Kiska DL, Appleman MD. Cumitech 43, Cystic Fibrosis Microbiology. Washington DC: ASM Press; 2006;p. 22
  46. Roche P, Krause V, Cook H, et al. Invasive Pneumococcal Disease in Australia. 2005;31(1):86–100CDI 2007
  47. Moskowitz SM, Foster JM, Emerson J, Bums JL. Clinically feasible biofilm susceptibility assay for isolates of Pseudomonas aeruginosa from patients with cystic fibrosis. J Clin Microbiol. 2004;42:1915–1922
  48. Morosini M, Garcia-Castillo M, Loza E, Perez-Vazquez M, Baquero F, Canton R. Breakpoints for predicting Pseudomonas aeruginosa susceptibility to inhaled tobramycin in cystic fibrosis patients: Use of high-range E test strips. J Clin Microbiol. 2005;43:4480–4485
  49. Aaron SD, Ferris W, Ramotar K, Vandemheen K, Chan F, Saginur R. Single and combination antibiotic susceptibilities of planktonic adherent and biofilm-grown Pseudomonas aeruginosa isolates cultured from sputa of adults with cystic fibrosis. J Clin Microbiol. 2002;40:4172–4179
  50. White RL, Burgess DS, Manduru M, Bosso JA. Comparison of three different in vitro methods of detecting synergy: Time kill, checkerboard and E test. Antimicrob Agents Chemother. 1996;40:1914–1918
  51. Aaron SD, Vandemheen KL, Ferris W, et al. Combination antibiotic susceptibility testing to treat exacerbations of cystic fibrosis associated with multiresistant bacteria: a randomized, double-blind, controlled clinical trial. Lancet. 2005;366:463–471
  52. Sader HS, Jones RN. Antimicrobial susceptibility of uncommonly isolated non-enteric Gram negative bacilli. Int J Antimicrob Agents. 2005;25:95–109
  53. Tristram S. Haemophilus influenzae and Antimicrobial Suceptibility. In:  Merlino J editors. Antimicrobial Susceptibility Testing: Methods and Practices with an Australian Perspective. Sydney: The antimicrobial Special interest Group of the Australian Society for Microbiology; 2004;p. 169–170Chapter 7
  54. Syrmis MW, O’Carroll MR, Sloots TP, et al. Rapid genotyping of Pseudomonas aeruginosa isolates harboured by adult and paediatric patients with cystic fibrosis using repetitive-element-based PCR assays. J Medical Microbiol. 2004;53:1089–1096
  55. Isles A, Maclusky I, Corey M, et al. Pseudomonas cepacia infection in cystic fibrosis: an emerging problem. J Pediatr. 1984;104:206–210
  56. Whiteford ML, Wilkinson JD, McColl JH, et al. Outcome of Burkholderia (Pseudomonas) cepacia colonisation in children with cystic fibrosis following a hospital outbreak. Thorax. 1995;l50:194–198
  57. Mahenthiralingam E, Van Damme P, Campbell ME, et al. Infection with Burkholderia cepacia complex genomovars in patients with cystic fibrosis: virulent transmissible strains of genomovar III can replace Burkholderia multivorans. Clin Infect Dis. 2001;33:1469–1475
  58. Guide SV, Stock F, Gill VJ, et al. Reinfection rather than persistent infection in patients with chronic granulomatous disease. J Infect Dis. 2003;187:845–853
  59. Ledson MJ, Gallagher MJ, Walshaw MJ. Chronic Burkholderia cepacia bronchiectasis in a non-cystic fibrosis individual. Thorax. 1998;53:430–432
  60. Ishizuka T, Oyama T, Sato M, et al. Fatal pneumonia caused by Burkholderia cepacia nine months after resection of aspergilloma. Respirology. 2003;8:401–403
  61. De Soyza A, McDowell A, Archer L, et al. Burkholderia cepacia complex genomovars and pulmonary transplantation outcomes in patients with cystic fibrosis. Lancet. 2001;358:1780–1781
  62. Saiman L, Siegel J. Cystic fibrosis foundation consensus conference on infection control participants. Infection control recommendations for patients with cystic fibrosis: Microbiology, important pathogens and infection control practices to prevent patient-to-patient transmission. Infect Control Hosp Epidemol. 2003;24(Suppl 5):S1–S52
  63. Labarca JA, Trick WE, Peterson CL, et al. A multistate nosocomial outbreak of Ralstonia pickettii colonization associated with an intrinsically contaminated respiratory care solution. Clin Infect Dis. 1999;29:1281–1286
  64. Goussard P, Gie RP, Steyn F, et al. Pasturella multocida lung and liver abscess in an immune-competent child. Pediatr Pulmonol. 2006;41:275–278
  65. Adhisivam B, Mahadevan S, Udaykumar C. Lung abscess caused by salmonella. Indian J Pediatr. 2006;73:450–451
  66. Chan PC, Huang LM, Wu PS, et al. Clinical management and outcome of childhood lung abscess: a 16 year experience. J Microbiol Immunol Infect. 2005;38:183–188
  67. Dagli E. Non cystic fibrosis bronchiectasis. Paediatr Resp Rev. 2000;1:64–70

PII: S1526-0542(07)00085-1

doi: 10.1016/j.prrv.2007.08.009

Paediatric Respiratory Reviews
Volume 8, Issue 3 , Pages 185-194 , September 2007